ChIP-seq Profiling service

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ChIP-seq at your fingertips: Full service from A to Z

  • Utilize our expertise: 10 years of experience in ChIP-Seq and official partner of IHEC-BLUEPRINT Epigenome Consortia
  • Customized support to match your needs
  • Dedicated in-house expert coordinates your project
  • High quality data with ENCODE standards
Currently, the method of choice to study the epigenome is the chromatin immunoprecipitation (ChIP) assay. ChIP is an invaluable method for studying interactions between specific proteins or modified forms of proteins and a genomic DNA region.
ChIP may seem intimidating but with the right tools can certainly be mastered. The principle of ChIP is simple, involving the selective enrichment of a chromatin fraction containing a specific antigen. Antibodies that recognize a protein or protein modification of interest can be used to determine the relative abundance of that antigen at one or more locations in the genome in vivo.

  • Description

    Chromatin shearing
    • Chromatin shearing using Bioruptor® technology
    • Isothermal chromatin shearing, preservation of epitopes
    • Homogeneous fragment size distribution
    • More than 3,000 Bioruptor citations in peer-reviewed publications
    Chromatin Immunoprecipitation
    • Choice of 200 ChIP & ChIP-Seq grade antibodies
    • Sample automation enables reproducibility
    • inputs from as little as 10,000 cells/IP
    • Optimized ChIP protocols maximize signal to noise ratio
    Library Preparation and Sequencing
    • Optimized library preparation for low amounts of DNA (50pg)
    • Minimal PCR amplification to reduce bias
    • Outstanding sequencing results (high coverage, low duplicates)
    • Rapid run available for shorter turnaround time
  • Bioinformatic analysis




    Standard • Read filtering and trimming
    • Read specific alignment
    • Enrichment specific peak calling
    • QC metrics
    • Basis of all analysis
    • Clear and easy to understand
    • Instant evaluation of data set
    • Provides flexibility for your desired downstream analysis
    Comparative • Multi-sample cross-comparison
    • Comparison with reference
    • Differential peak calling with normalization
    • Best quality assessment using comparisons with highly reliable reference data sets
    • Multi-sample comparison allows decisive determination of similarities and differences (e.g. between healthy and tumor cells)
    Custom • Tailored to your project needs
    • Options include
    - Peak profiling
    - Pathway analysis
    - Visualization of regions of interest
    - Annotation - Custom graph (publication-ready)
    ...and much more
    • Your unique project gets its unique analysis
    • No need for your own bioinformatician
    • Our expert consultation and analysis is customized for your project
    • You name your requirements -- we deliver!
  • Applications
    Chromatin Immunoprecipitation (ChIP) coupled with high-throughput massively parallel sequencing as a detection method (ChIP-seq) has become one of the primary methods for epigenomics researchers, namely to investigate protein-DNA interaction on ... Read more
  • Documents
    The Diagenode Epigenetics custom service POSTER
    Complete workflows for genome-scale DNA methylation and histone marks analysis Epigenetics is cr...
  • Publications

    How to properly cite this product in your work

    Diagenode strongly recommends using this: ChIP-seq Profiling service (Diagenode Cat# G02010000). Click here to copy to clipboard.

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    The epigenetic architecture at gene promoters determines cell type-specific LPS tolerance
    Kerstin Klein , Mojca Frank-Bertoncelj , Emmanuel Karouzakis , Renate E. Gay , Christoph Kolling , Adrian Ciurea , Nagihan Bostanci , Georgios N. Belibasakis , Lih-Ling Lin , Oliver Distler , Steffen Gay , Caroline Ospelt
    Synovial fibroblasts (SF) drive inflammation and joint destruction in chronic arthritis. Here we show that SF possess a distinct type of LPS tolerance compared to macrophages and other types of fibroblasts. In SF and dermal fibroblasts, genes that were non-tolerizable after repeated LPS stimulation included proinfla...

    PPARγ Links BMP2 and TGFβ1 Pathways in Vascular Smooth Muscle Cells, Regulating Cell Proliferation and Glucose Metabolism
    Laurent Calvier, Philippe Chouvarine, Ekaterina Legchenko, Nadine Hoffmann, Jonas Geldner, Paul Borchert, Danny Jonigk, Miklos M. Mozes, Georg Hansmann
    BMP2 and TGFβ1 are functional antagonists of pathological remodeling in the arteries, heart, and lung; however, the mechanisms in VSMCs, and their disturbance in pulmonary arterial hypertension (PAH), are unclear. We found a pro-proliferative TGFβ1-Stat3-FoxO1 axis in VSMCs, and PPARγ as in...

    Epigenetically-driven anatomical diversity of synovial fibroblasts guides joint-specific fibroblast functions
    Mojca Frank-Bertoncelj, Michelle Trenkmann, Kerstin Klein, Emmanuel Karouzakis, Hubert Rehrauer, Anna Bratus, Christoph Kolling, Maria Armaka, Andrew Filer, Beat Michel, Renate E. Gay, Christopher D. Buckley, George Kollias, Steffen Gay & Caroline Ospelt
    A number of human diseases, such as arthritis and atherosclerosis, include characteristic pathology in specific anatomical locations. Here we show transcriptomic differences in synovial fibroblasts from different joint locations and that HOX gene signatures reflect the joint-specific origins of mouse and human synov...

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