Notice (8): Undefined variable: solution_of_interest [APP/View/Products/view.ctp, line 755]Code Context<!-- BEGIN: REQUEST_FORM MODAL -->
<div id="request_formModal" class="reveal-modal medium" data-reveal aria-labelledby="modalTitle" aria-hidden="true" role="dialog">
<?= $this->element('Forms/simple_form', array('solution_of_interest' => $solution_of_interest, 'header' => $header, 'message' => $message, 'campaign_id' => $campaign_id)) ?>
$viewFile = '/home/website-server/www/app/View/Products/view.ctp'
$dataForView = array(
'language' => 'en',
'meta_keywords' => '',
'meta_description' => 'This service provides information on each region specifically bound by the targeted protein (peak) as well as its level of enrichment (ChIP-seq) or openness (ATAC-seq)',
'meta_title' => 'Chromatin Data Analysis services for ChIp-Seq and ATAC-Seq | Diagenode',
'product' => array(
'Product' => array(
'id' => '3060',
'antibody_id' => null,
'name' => 'Chromatin Data Analysis',
'description' => '<p>Chromatin Immunoprecipitation and <strong>A</strong>ssay for <strong>T</strong>ransposase-<strong>A</strong>ccessible <strong>C</strong>hromatin followed by high-throughput <strong>seq</strong>uencing (ChIp-Seq and ATAC-Seq, respectively) are two popular technologies used to study epigenetic regulations. ChIP-Seq allows the identification of genomic regions bound by a specific protein including histones, while ATAC-Seq evaluates the openness of heterochromatin regions accessible for epigenetic regulation. At Diagenode we have optimized the computing parameters to accurately detect binding sites and accessible chromatin regions. Specific parameters can be customized depending on the specifications of each project.</p>
<p>You can also consult with us for sequencing strategies to determine sequencing depth, read length and pairing mode that will vary greatly depending on the protein of interest and the biological question.</p>
<div class="extra-spaced">
<h2>What do we provide with the analysis?</h2>
<p>This analysis provides information on each region specifically bound by the targeted protein (peak) as well as its level of enrichment (ChIP-seq) or openness (ATAC-seq).</p>
<h3 class="diacol" style="font-weight: 100;">Standard Analysis</h3>
<ul class="square">
<li>Summary statistics (total sequenced reads, total mapping reads, uniquely aligned reads, PCR duplicates, number of peaks, average peak width, reads in peaks, frequency of reads in peaks, etc.)</li>
<li>Trimmed and filtered reads in fastQ files after sequencing QC</li>
<li>BAM sorted files from alignment to reference genome (indexed bam files and bigwig files included)</li>
<li>BED files from peak calling (peak location, peak calling score, peak density)</li>
<li>Annotation files with location of the peaks within genes</li>
</ul>
<h3 class="diacol" style="font-weight: 100;">Advanced Analysis</h3>
<ul class="square">
<li>Comparative analysis (also called differential analysis) aimed at finding differentially bound sites or uniquely bound sites between two groups of samples</li>
<li>Annotation of differentially/uniquely bound sites</li>
<li>Determination of specific binding motifs within peaks</li>
<li>Gene ontology enrichment analysis on differentially binding/unique sites</li>
<li>Pathway enrichment analysis (KEGG or DOSE for human samples)</li>
<ul style="list-style-type: circle;"></ul>
</ul>
<h3 class="diacol" style="font-weight: 100;">Customized Analysis</h3>
<p class="text-left">If you require a type of analysis that is not in the previous list, <a href="#" data-reveal-id="quoteModal-3060">please consult with our expert bioinformatics team</a>.</p>
</div>
<div class="extra-spaced">
<h4>ChIP-seq</h4>
<center><img src="https://www.diagenode.com/img/product/services/chipseq-schema.png" width="600" height="757" /></center></div>
<div class="extra-spaced">
<h4>ATAC-Seq</h4>
<center><img src="https://www.diagenode.com/img/product/services/atacseq-schema.png" width="600" height="441" /></center></div>',
'label1' => '',
'info1' => '',
'label2' => '',
'info2' => '',
'label3' => '',
'info3' => '',
'format' => '',
'catalog_number' => 'G02010107',
'old_catalog_number' => '',
'sf_code' => '',
'type' => 'ACC',
'search_order' => '',
'price_EUR' => '/',
'price_USD' => '/',
'price_GBP' => '/',
'price_JPY' => '42800',
'price_CNY' => '/',
'price_AUD' => '/',
'country' => 'ALL',
'except_countries' => 'None',
'quote' => true,
'in_stock' => false,
'featured' => true,
'no_promo' => false,
'online' => true,
'master' => true,
'last_datasheet_update' => '',
'slug' => 'chromatin-data-analysis',
'meta_title' => 'Chromatin Data Analysis services for ChIp-Seq and ATAC-Seq | Diagenode',
'meta_keywords' => '',
'meta_description' => 'This service provides information on each region specifically bound by the targeted protein (peak) as well as its level of enrichment (ChIP-seq) or openness (ATAC-seq)',
'modified' => '2021-01-12 12:14:54',
'created' => '2020-03-26 10:01:39',
'locale' => 'eng'
),
'Antibody' => array(
'host' => '*****',
'id' => null,
'name' => null,
'description' => null,
'clonality' => null,
'isotype' => null,
'lot' => null,
'concentration' => null,
'reactivity' => null,
'type' => null,
'purity' => null,
'classification' => null,
'application_table' => null,
'storage_conditions' => null,
'storage_buffer' => null,
'precautions' => null,
'uniprot_acc' => null,
'slug' => null,
'meta_keywords' => null,
'meta_description' => null,
'modified' => null,
'created' => null,
'select_label' => null
),
'Slave' => array(),
'Group' => array(),
'Related' => array(),
'Application' => array(),
'Category' => array(
(int) 0 => array(
[maximum depth reached]
)
),
'Document' => array(),
'Feature' => array(),
'Image' => array(),
'Promotion' => array(),
'Protocol' => array(),
'Publication' => array(),
'Testimonial' => array(),
'Area' => array(),
'SafetySheet' => array()
)
)
$language = 'en'
$meta_keywords = ''
$meta_description = 'This service provides information on each region specifically bound by the targeted protein (peak) as well as its level of enrichment (ChIP-seq) or openness (ATAC-seq)'
$meta_title = 'Chromatin Data Analysis services for ChIp-Seq and ATAC-Seq | Diagenode'
$product = array(
'Product' => array(
'id' => '3060',
'antibody_id' => null,
'name' => 'Chromatin Data Analysis',
'description' => '<p>Chromatin Immunoprecipitation and <strong>A</strong>ssay for <strong>T</strong>ransposase-<strong>A</strong>ccessible <strong>C</strong>hromatin followed by high-throughput <strong>seq</strong>uencing (ChIp-Seq and ATAC-Seq, respectively) are two popular technologies used to study epigenetic regulations. ChIP-Seq allows the identification of genomic regions bound by a specific protein including histones, while ATAC-Seq evaluates the openness of heterochromatin regions accessible for epigenetic regulation. At Diagenode we have optimized the computing parameters to accurately detect binding sites and accessible chromatin regions. Specific parameters can be customized depending on the specifications of each project.</p>
<p>You can also consult with us for sequencing strategies to determine sequencing depth, read length and pairing mode that will vary greatly depending on the protein of interest and the biological question.</p>
<div class="extra-spaced">
<h2>What do we provide with the analysis?</h2>
<p>This analysis provides information on each region specifically bound by the targeted protein (peak) as well as its level of enrichment (ChIP-seq) or openness (ATAC-seq).</p>
<h3 class="diacol" style="font-weight: 100;">Standard Analysis</h3>
<ul class="square">
<li>Summary statistics (total sequenced reads, total mapping reads, uniquely aligned reads, PCR duplicates, number of peaks, average peak width, reads in peaks, frequency of reads in peaks, etc.)</li>
<li>Trimmed and filtered reads in fastQ files after sequencing QC</li>
<li>BAM sorted files from alignment to reference genome (indexed bam files and bigwig files included)</li>
<li>BED files from peak calling (peak location, peak calling score, peak density)</li>
<li>Annotation files with location of the peaks within genes</li>
</ul>
<h3 class="diacol" style="font-weight: 100;">Advanced Analysis</h3>
<ul class="square">
<li>Comparative analysis (also called differential analysis) aimed at finding differentially bound sites or uniquely bound sites between two groups of samples</li>
<li>Annotation of differentially/uniquely bound sites</li>
<li>Determination of specific binding motifs within peaks</li>
<li>Gene ontology enrichment analysis on differentially binding/unique sites</li>
<li>Pathway enrichment analysis (KEGG or DOSE for human samples)</li>
<ul style="list-style-type: circle;"></ul>
</ul>
<h3 class="diacol" style="font-weight: 100;">Customized Analysis</h3>
<p class="text-left">If you require a type of analysis that is not in the previous list, <a href="#" data-reveal-id="quoteModal-3060">please consult with our expert bioinformatics team</a>.</p>
</div>
<div class="extra-spaced">
<h4>ChIP-seq</h4>
<center><img src="https://www.diagenode.com/img/product/services/chipseq-schema.png" width="600" height="757" /></center></div>
<div class="extra-spaced">
<h4>ATAC-Seq</h4>
<center><img src="https://www.diagenode.com/img/product/services/atacseq-schema.png" width="600" height="441" /></center></div>',
'label1' => '',
'info1' => '',
'label2' => '',
'info2' => '',
'label3' => '',
'info3' => '',
'format' => '',
'catalog_number' => 'G02010107',
'old_catalog_number' => '',
'sf_code' => '',
'type' => 'ACC',
'search_order' => '',
'price_EUR' => '/',
'price_USD' => '/',
'price_GBP' => '/',
'price_JPY' => '42800',
'price_CNY' => '/',
'price_AUD' => '/',
'country' => 'ALL',
'except_countries' => 'None',
'quote' => true,
'in_stock' => false,
'featured' => true,
'no_promo' => false,
'online' => true,
'master' => true,
'last_datasheet_update' => '',
'slug' => 'chromatin-data-analysis',
'meta_title' => 'Chromatin Data Analysis services for ChIp-Seq and ATAC-Seq | Diagenode',
'meta_keywords' => '',
'meta_description' => 'This service provides information on each region specifically bound by the targeted protein (peak) as well as its level of enrichment (ChIP-seq) or openness (ATAC-seq)',
'modified' => '2021-01-12 12:14:54',
'created' => '2020-03-26 10:01:39',
'locale' => 'eng'
),
'Antibody' => array(
'host' => '*****',
'id' => null,
'name' => null,
'description' => null,
'clonality' => null,
'isotype' => null,
'lot' => null,
'concentration' => null,
'reactivity' => null,
'type' => null,
'purity' => null,
'classification' => null,
'application_table' => null,
'storage_conditions' => null,
'storage_buffer' => null,
'precautions' => null,
'uniprot_acc' => null,
'slug' => null,
'meta_keywords' => null,
'meta_description' => null,
'modified' => null,
'created' => null,
'select_label' => null
),
'Slave' => array(),
'Group' => array(),
'Related' => array(),
'Application' => array(),
'Category' => array(
(int) 0 => array(
'id' => '140',
'position' => '0',
'parent_id' => null,
'name' => 'Epigenomics Data Analysis Service',
'description' => '<div class="row">
<div class="small-12 medium-12 large-12 columns">
<div class="extra-spaced"><iframe width="560" height="315" src="https://www.youtube.com/embed/Ro5AOX_348M" frameborder="0" allow="accelerometer; autoplay; encrypted-media; gyroscope; picture-in-picture" allowfullscreen="allowfullscreen"></iframe></div>
</div>
</div>
<div class="extra-spaced">
<p>Epigenomic Services at Diagenode offers data analysis solutions for different application areas. These analysis services are open to everyone, whether you use our wet lab and sequencing service with us or not.</p>
</div>
<div class="extra-spaced">
<h2 class="diacol">ADVANTAGES</h2>
<ol>
<li>The bioinformatics team works constantly to optimize pipelines to deliver biologically meaningful results within a short turnaround time</li>
<li>Flexible and communicative team work in close collaboration with you to adapt to your analysis requirements</li>
<li>We help you shape the methods section of your manuscripts</li>
<li>We back up our internal servers daily to protect your data</li>
<li>We have great computing capacity to undertake large projects.</li>
</ol>
</div>
<div class="extra-spaced">
<h2>Check out our service offerings</h2>
<ul class="nobullet">
<li><i class="fa fa-arrow-circle-right"></i> <a href="https://www.diagenode.com/en/p/chromatin-data-analysis">Chromatin studies</a></li>
<li><i class="fa fa-arrow-circle-right"></i> <a href="https://www.diagenode.com/en/p/methylation-data-analysis">Methylation studies</a></li>
<li><i class="fa fa-arrow-circle-right"></i> <a href="https://www.diagenode.com/en/p/rna-data-analysis">RNA studies</a></li>
<li><i class="fa fa-arrow-circle-right"></i> <a href="https://www.diagenode.com/en/p/integrative-analysis">Integrative analysis of multiple omics data</a></li>
<li><i class="fa fa-arrow-circle-right"></i> <a href="https://www.diagenode.com/en/p/data-mining-service">Data mining with machine learning techniques</a></li>
</ul>
</div>
<div class="extra-spaced"><center><img src="https://www.diagenode.com/img/product/services/tech-tab.png" /></center></div>',
'no_promo' => true,
'in_menu' => false,
'online' => true,
'tabular' => false,
'hide' => false,
'all_format' => false,
'is_antibody' => false,
'slug' => 'bioinformatics-service',
'cookies_tag_id' => null,
'meta_keywords' => '',
'meta_description' => 'Epigenomic Services at Diagenode offers data analysis solutions for chromatin studies, methylation studies, RNA-seq, Integrative analysis of multiple omics data and Data mining. Contact our experienced bioinformatics team to analyze your data.',
'meta_title' => 'Epigenomics Bioinformatics data analysis Services | Diagenode',
'modified' => '2024-04-25 12:09:28',
'created' => '2019-07-29 11:06:33',
'ProductsCategory' => array(
[maximum depth reached]
),
'CookiesTag' => array([maximum depth reached])
)
),
'Document' => array(),
'Feature' => array(),
'Image' => array(),
'Promotion' => array(),
'Protocol' => array(),
'Publication' => array(),
'Testimonial' => array(),
'Area' => array(),
'SafetySheet' => array()
)
$country = 'US'
$countries_allowed = array(
(int) 0 => 'CA',
(int) 1 => 'US',
(int) 2 => 'IE',
(int) 3 => 'GB',
(int) 4 => 'DK',
(int) 5 => 'NO',
(int) 6 => 'SE',
(int) 7 => 'FI',
(int) 8 => 'NL',
(int) 9 => 'BE',
(int) 10 => 'LU',
(int) 11 => 'FR',
(int) 12 => 'DE',
(int) 13 => 'CH',
(int) 14 => 'AT',
(int) 15 => 'ES',
(int) 16 => 'IT',
(int) 17 => 'PT'
)
$outsource = false
$other_formats = array()
$edit = ''
$testimonials = ''
$featured_testimonials = ''
$related_products = ''
$rrbs_service = array(
(int) 0 => (int) 1894,
(int) 1 => (int) 1895
)
$chipseq_service = array(
(int) 0 => (int) 2683,
(int) 1 => (int) 1835,
(int) 2 => (int) 1836,
(int) 3 => (int) 2684,
(int) 4 => (int) 1838,
(int) 5 => (int) 1839,
(int) 6 => (int) 1856
)
$labelize = object(Closure) {
}
$old_catalog_number = ''
$label = '<img src="/img/banners/banner-customizer-back.png" alt=""/>'include - APP/View/Products/view.ctp, line 755
View::_evaluate() - CORE/Cake/View/View.php, line 971
View::_render() - CORE/Cake/View/View.php, line 933
View::render() - CORE/Cake/View/View.php, line 473
Controller::render() - CORE/Cake/Controller/Controller.php, line 963
ProductsController::slug() - APP/Controller/ProductsController.php, line 1052
ReflectionMethod::invokeArgs() - [internal], line ??
Controller::invokeAction() - CORE/Cake/Controller/Controller.php, line 491
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 193
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167
[main] - APP/webroot/index.php, line 118
Notice (8): Undefined variable: header [APP/View/Products/view.ctp, line 755]Code Context<!-- BEGIN: REQUEST_FORM MODAL -->
<div id="request_formModal" class="reveal-modal medium" data-reveal aria-labelledby="modalTitle" aria-hidden="true" role="dialog">
<?= $this->element('Forms/simple_form', array('solution_of_interest' => $solution_of_interest, 'header' => $header, 'message' => $message, 'campaign_id' => $campaign_id)) ?>
$viewFile = '/home/website-server/www/app/View/Products/view.ctp'
$dataForView = array(
'language' => 'en',
'meta_keywords' => '',
'meta_description' => 'This service provides information on each region specifically bound by the targeted protein (peak) as well as its level of enrichment (ChIP-seq) or openness (ATAC-seq)',
'meta_title' => 'Chromatin Data Analysis services for ChIp-Seq and ATAC-Seq | Diagenode',
'product' => array(
'Product' => array(
'id' => '3060',
'antibody_id' => null,
'name' => 'Chromatin Data Analysis',
'description' => '<p>Chromatin Immunoprecipitation and <strong>A</strong>ssay for <strong>T</strong>ransposase-<strong>A</strong>ccessible <strong>C</strong>hromatin followed by high-throughput <strong>seq</strong>uencing (ChIp-Seq and ATAC-Seq, respectively) are two popular technologies used to study epigenetic regulations. ChIP-Seq allows the identification of genomic regions bound by a specific protein including histones, while ATAC-Seq evaluates the openness of heterochromatin regions accessible for epigenetic regulation. At Diagenode we have optimized the computing parameters to accurately detect binding sites and accessible chromatin regions. Specific parameters can be customized depending on the specifications of each project.</p>
<p>You can also consult with us for sequencing strategies to determine sequencing depth, read length and pairing mode that will vary greatly depending on the protein of interest and the biological question.</p>
<div class="extra-spaced">
<h2>What do we provide with the analysis?</h2>
<p>This analysis provides information on each region specifically bound by the targeted protein (peak) as well as its level of enrichment (ChIP-seq) or openness (ATAC-seq).</p>
<h3 class="diacol" style="font-weight: 100;">Standard Analysis</h3>
<ul class="square">
<li>Summary statistics (total sequenced reads, total mapping reads, uniquely aligned reads, PCR duplicates, number of peaks, average peak width, reads in peaks, frequency of reads in peaks, etc.)</li>
<li>Trimmed and filtered reads in fastQ files after sequencing QC</li>
<li>BAM sorted files from alignment to reference genome (indexed bam files and bigwig files included)</li>
<li>BED files from peak calling (peak location, peak calling score, peak density)</li>
<li>Annotation files with location of the peaks within genes</li>
</ul>
<h3 class="diacol" style="font-weight: 100;">Advanced Analysis</h3>
<ul class="square">
<li>Comparative analysis (also called differential analysis) aimed at finding differentially bound sites or uniquely bound sites between two groups of samples</li>
<li>Annotation of differentially/uniquely bound sites</li>
<li>Determination of specific binding motifs within peaks</li>
<li>Gene ontology enrichment analysis on differentially binding/unique sites</li>
<li>Pathway enrichment analysis (KEGG or DOSE for human samples)</li>
<ul style="list-style-type: circle;"></ul>
</ul>
<h3 class="diacol" style="font-weight: 100;">Customized Analysis</h3>
<p class="text-left">If you require a type of analysis that is not in the previous list, <a href="#" data-reveal-id="quoteModal-3060">please consult with our expert bioinformatics team</a>.</p>
</div>
<div class="extra-spaced">
<h4>ChIP-seq</h4>
<center><img src="https://www.diagenode.com/img/product/services/chipseq-schema.png" width="600" height="757" /></center></div>
<div class="extra-spaced">
<h4>ATAC-Seq</h4>
<center><img src="https://www.diagenode.com/img/product/services/atacseq-schema.png" width="600" height="441" /></center></div>',
'label1' => '',
'info1' => '',
'label2' => '',
'info2' => '',
'label3' => '',
'info3' => '',
'format' => '',
'catalog_number' => 'G02010107',
'old_catalog_number' => '',
'sf_code' => '',
'type' => 'ACC',
'search_order' => '',
'price_EUR' => '/',
'price_USD' => '/',
'price_GBP' => '/',
'price_JPY' => '42800',
'price_CNY' => '/',
'price_AUD' => '/',
'country' => 'ALL',
'except_countries' => 'None',
'quote' => true,
'in_stock' => false,
'featured' => true,
'no_promo' => false,
'online' => true,
'master' => true,
'last_datasheet_update' => '',
'slug' => 'chromatin-data-analysis',
'meta_title' => 'Chromatin Data Analysis services for ChIp-Seq and ATAC-Seq | Diagenode',
'meta_keywords' => '',
'meta_description' => 'This service provides information on each region specifically bound by the targeted protein (peak) as well as its level of enrichment (ChIP-seq) or openness (ATAC-seq)',
'modified' => '2021-01-12 12:14:54',
'created' => '2020-03-26 10:01:39',
'locale' => 'eng'
),
'Antibody' => array(
'host' => '*****',
'id' => null,
'name' => null,
'description' => null,
'clonality' => null,
'isotype' => null,
'lot' => null,
'concentration' => null,
'reactivity' => null,
'type' => null,
'purity' => null,
'classification' => null,
'application_table' => null,
'storage_conditions' => null,
'storage_buffer' => null,
'precautions' => null,
'uniprot_acc' => null,
'slug' => null,
'meta_keywords' => null,
'meta_description' => null,
'modified' => null,
'created' => null,
'select_label' => null
),
'Slave' => array(),
'Group' => array(),
'Related' => array(),
'Application' => array(),
'Category' => array(
(int) 0 => array(
[maximum depth reached]
)
),
'Document' => array(),
'Feature' => array(),
'Image' => array(),
'Promotion' => array(),
'Protocol' => array(),
'Publication' => array(),
'Testimonial' => array(),
'Area' => array(),
'SafetySheet' => array()
)
)
$language = 'en'
$meta_keywords = ''
$meta_description = 'This service provides information on each region specifically bound by the targeted protein (peak) as well as its level of enrichment (ChIP-seq) or openness (ATAC-seq)'
$meta_title = 'Chromatin Data Analysis services for ChIp-Seq and ATAC-Seq | Diagenode'
$product = array(
'Product' => array(
'id' => '3060',
'antibody_id' => null,
'name' => 'Chromatin Data Analysis',
'description' => '<p>Chromatin Immunoprecipitation and <strong>A</strong>ssay for <strong>T</strong>ransposase-<strong>A</strong>ccessible <strong>C</strong>hromatin followed by high-throughput <strong>seq</strong>uencing (ChIp-Seq and ATAC-Seq, respectively) are two popular technologies used to study epigenetic regulations. ChIP-Seq allows the identification of genomic regions bound by a specific protein including histones, while ATAC-Seq evaluates the openness of heterochromatin regions accessible for epigenetic regulation. At Diagenode we have optimized the computing parameters to accurately detect binding sites and accessible chromatin regions. Specific parameters can be customized depending on the specifications of each project.</p>
<p>You can also consult with us for sequencing strategies to determine sequencing depth, read length and pairing mode that will vary greatly depending on the protein of interest and the biological question.</p>
<div class="extra-spaced">
<h2>What do we provide with the analysis?</h2>
<p>This analysis provides information on each region specifically bound by the targeted protein (peak) as well as its level of enrichment (ChIP-seq) or openness (ATAC-seq).</p>
<h3 class="diacol" style="font-weight: 100;">Standard Analysis</h3>
<ul class="square">
<li>Summary statistics (total sequenced reads, total mapping reads, uniquely aligned reads, PCR duplicates, number of peaks, average peak width, reads in peaks, frequency of reads in peaks, etc.)</li>
<li>Trimmed and filtered reads in fastQ files after sequencing QC</li>
<li>BAM sorted files from alignment to reference genome (indexed bam files and bigwig files included)</li>
<li>BED files from peak calling (peak location, peak calling score, peak density)</li>
<li>Annotation files with location of the peaks within genes</li>
</ul>
<h3 class="diacol" style="font-weight: 100;">Advanced Analysis</h3>
<ul class="square">
<li>Comparative analysis (also called differential analysis) aimed at finding differentially bound sites or uniquely bound sites between two groups of samples</li>
<li>Annotation of differentially/uniquely bound sites</li>
<li>Determination of specific binding motifs within peaks</li>
<li>Gene ontology enrichment analysis on differentially binding/unique sites</li>
<li>Pathway enrichment analysis (KEGG or DOSE for human samples)</li>
<ul style="list-style-type: circle;"></ul>
</ul>
<h3 class="diacol" style="font-weight: 100;">Customized Analysis</h3>
<p class="text-left">If you require a type of analysis that is not in the previous list, <a href="#" data-reveal-id="quoteModal-3060">please consult with our expert bioinformatics team</a>.</p>
</div>
<div class="extra-spaced">
<h4>ChIP-seq</h4>
<center><img src="https://www.diagenode.com/img/product/services/chipseq-schema.png" width="600" height="757" /></center></div>
<div class="extra-spaced">
<h4>ATAC-Seq</h4>
<center><img src="https://www.diagenode.com/img/product/services/atacseq-schema.png" width="600" height="441" /></center></div>',
'label1' => '',
'info1' => '',
'label2' => '',
'info2' => '',
'label3' => '',
'info3' => '',
'format' => '',
'catalog_number' => 'G02010107',
'old_catalog_number' => '',
'sf_code' => '',
'type' => 'ACC',
'search_order' => '',
'price_EUR' => '/',
'price_USD' => '/',
'price_GBP' => '/',
'price_JPY' => '42800',
'price_CNY' => '/',
'price_AUD' => '/',
'country' => 'ALL',
'except_countries' => 'None',
'quote' => true,
'in_stock' => false,
'featured' => true,
'no_promo' => false,
'online' => true,
'master' => true,
'last_datasheet_update' => '',
'slug' => 'chromatin-data-analysis',
'meta_title' => 'Chromatin Data Analysis services for ChIp-Seq and ATAC-Seq | Diagenode',
'meta_keywords' => '',
'meta_description' => 'This service provides information on each region specifically bound by the targeted protein (peak) as well as its level of enrichment (ChIP-seq) or openness (ATAC-seq)',
'modified' => '2021-01-12 12:14:54',
'created' => '2020-03-26 10:01:39',
'locale' => 'eng'
),
'Antibody' => array(
'host' => '*****',
'id' => null,
'name' => null,
'description' => null,
'clonality' => null,
'isotype' => null,
'lot' => null,
'concentration' => null,
'reactivity' => null,
'type' => null,
'purity' => null,
'classification' => null,
'application_table' => null,
'storage_conditions' => null,
'storage_buffer' => null,
'precautions' => null,
'uniprot_acc' => null,
'slug' => null,
'meta_keywords' => null,
'meta_description' => null,
'modified' => null,
'created' => null,
'select_label' => null
),
'Slave' => array(),
'Group' => array(),
'Related' => array(),
'Application' => array(),
'Category' => array(
(int) 0 => array(
'id' => '140',
'position' => '0',
'parent_id' => null,
'name' => 'Epigenomics Data Analysis Service',
'description' => '<div class="row">
<div class="small-12 medium-12 large-12 columns">
<div class="extra-spaced"><iframe width="560" height="315" src="https://www.youtube.com/embed/Ro5AOX_348M" frameborder="0" allow="accelerometer; autoplay; encrypted-media; gyroscope; picture-in-picture" allowfullscreen="allowfullscreen"></iframe></div>
</div>
</div>
<div class="extra-spaced">
<p>Epigenomic Services at Diagenode offers data analysis solutions for different application areas. These analysis services are open to everyone, whether you use our wet lab and sequencing service with us or not.</p>
</div>
<div class="extra-spaced">
<h2 class="diacol">ADVANTAGES</h2>
<ol>
<li>The bioinformatics team works constantly to optimize pipelines to deliver biologically meaningful results within a short turnaround time</li>
<li>Flexible and communicative team work in close collaboration with you to adapt to your analysis requirements</li>
<li>We help you shape the methods section of your manuscripts</li>
<li>We back up our internal servers daily to protect your data</li>
<li>We have great computing capacity to undertake large projects.</li>
</ol>
</div>
<div class="extra-spaced">
<h2>Check out our service offerings</h2>
<ul class="nobullet">
<li><i class="fa fa-arrow-circle-right"></i> <a href="https://www.diagenode.com/en/p/chromatin-data-analysis">Chromatin studies</a></li>
<li><i class="fa fa-arrow-circle-right"></i> <a href="https://www.diagenode.com/en/p/methylation-data-analysis">Methylation studies</a></li>
<li><i class="fa fa-arrow-circle-right"></i> <a href="https://www.diagenode.com/en/p/rna-data-analysis">RNA studies</a></li>
<li><i class="fa fa-arrow-circle-right"></i> <a href="https://www.diagenode.com/en/p/integrative-analysis">Integrative analysis of multiple omics data</a></li>
<li><i class="fa fa-arrow-circle-right"></i> <a href="https://www.diagenode.com/en/p/data-mining-service">Data mining with machine learning techniques</a></li>
</ul>
</div>
<div class="extra-spaced"><center><img src="https://www.diagenode.com/img/product/services/tech-tab.png" /></center></div>',
'no_promo' => true,
'in_menu' => false,
'online' => true,
'tabular' => false,
'hide' => false,
'all_format' => false,
'is_antibody' => false,
'slug' => 'bioinformatics-service',
'cookies_tag_id' => null,
'meta_keywords' => '',
'meta_description' => 'Epigenomic Services at Diagenode offers data analysis solutions for chromatin studies, methylation studies, RNA-seq, Integrative analysis of multiple omics data and Data mining. Contact our experienced bioinformatics team to analyze your data.',
'meta_title' => 'Epigenomics Bioinformatics data analysis Services | Diagenode',
'modified' => '2024-04-25 12:09:28',
'created' => '2019-07-29 11:06:33',
'ProductsCategory' => array(
[maximum depth reached]
),
'CookiesTag' => array([maximum depth reached])
)
),
'Document' => array(),
'Feature' => array(),
'Image' => array(),
'Promotion' => array(),
'Protocol' => array(),
'Publication' => array(),
'Testimonial' => array(),
'Area' => array(),
'SafetySheet' => array()
)
$country = 'US'
$countries_allowed = array(
(int) 0 => 'CA',
(int) 1 => 'US',
(int) 2 => 'IE',
(int) 3 => 'GB',
(int) 4 => 'DK',
(int) 5 => 'NO',
(int) 6 => 'SE',
(int) 7 => 'FI',
(int) 8 => 'NL',
(int) 9 => 'BE',
(int) 10 => 'LU',
(int) 11 => 'FR',
(int) 12 => 'DE',
(int) 13 => 'CH',
(int) 14 => 'AT',
(int) 15 => 'ES',
(int) 16 => 'IT',
(int) 17 => 'PT'
)
$outsource = false
$other_formats = array()
$edit = ''
$testimonials = ''
$featured_testimonials = ''
$related_products = ''
$rrbs_service = array(
(int) 0 => (int) 1894,
(int) 1 => (int) 1895
)
$chipseq_service = array(
(int) 0 => (int) 2683,
(int) 1 => (int) 1835,
(int) 2 => (int) 1836,
(int) 3 => (int) 2684,
(int) 4 => (int) 1838,
(int) 5 => (int) 1839,
(int) 6 => (int) 1856
)
$labelize = object(Closure) {
}
$old_catalog_number = ''
$label = '<img src="/img/banners/banner-customizer-back.png" alt=""/>'include - APP/View/Products/view.ctp, line 755
View::_evaluate() - CORE/Cake/View/View.php, line 971
View::_render() - CORE/Cake/View/View.php, line 933
View::render() - CORE/Cake/View/View.php, line 473
Controller::render() - CORE/Cake/Controller/Controller.php, line 963
ProductsController::slug() - APP/Controller/ProductsController.php, line 1052
ReflectionMethod::invokeArgs() - [internal], line ??
Controller::invokeAction() - CORE/Cake/Controller/Controller.php, line 491
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 193
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167
[main] - APP/webroot/index.php, line 118
Notice (8): Undefined variable: message [APP/View/Products/view.ctp, line 755]Code Context<!-- BEGIN: REQUEST_FORM MODAL -->
<div id="request_formModal" class="reveal-modal medium" data-reveal aria-labelledby="modalTitle" aria-hidden="true" role="dialog">
<?= $this->element('Forms/simple_form', array('solution_of_interest' => $solution_of_interest, 'header' => $header, 'message' => $message, 'campaign_id' => $campaign_id)) ?>
$viewFile = '/home/website-server/www/app/View/Products/view.ctp'
$dataForView = array(
'language' => 'en',
'meta_keywords' => '',
'meta_description' => 'This service provides information on each region specifically bound by the targeted protein (peak) as well as its level of enrichment (ChIP-seq) or openness (ATAC-seq)',
'meta_title' => 'Chromatin Data Analysis services for ChIp-Seq and ATAC-Seq | Diagenode',
'product' => array(
'Product' => array(
'id' => '3060',
'antibody_id' => null,
'name' => 'Chromatin Data Analysis',
'description' => '<p>Chromatin Immunoprecipitation and <strong>A</strong>ssay for <strong>T</strong>ransposase-<strong>A</strong>ccessible <strong>C</strong>hromatin followed by high-throughput <strong>seq</strong>uencing (ChIp-Seq and ATAC-Seq, respectively) are two popular technologies used to study epigenetic regulations. ChIP-Seq allows the identification of genomic regions bound by a specific protein including histones, while ATAC-Seq evaluates the openness of heterochromatin regions accessible for epigenetic regulation. At Diagenode we have optimized the computing parameters to accurately detect binding sites and accessible chromatin regions. Specific parameters can be customized depending on the specifications of each project.</p>
<p>You can also consult with us for sequencing strategies to determine sequencing depth, read length and pairing mode that will vary greatly depending on the protein of interest and the biological question.</p>
<div class="extra-spaced">
<h2>What do we provide with the analysis?</h2>
<p>This analysis provides information on each region specifically bound by the targeted protein (peak) as well as its level of enrichment (ChIP-seq) or openness (ATAC-seq).</p>
<h3 class="diacol" style="font-weight: 100;">Standard Analysis</h3>
<ul class="square">
<li>Summary statistics (total sequenced reads, total mapping reads, uniquely aligned reads, PCR duplicates, number of peaks, average peak width, reads in peaks, frequency of reads in peaks, etc.)</li>
<li>Trimmed and filtered reads in fastQ files after sequencing QC</li>
<li>BAM sorted files from alignment to reference genome (indexed bam files and bigwig files included)</li>
<li>BED files from peak calling (peak location, peak calling score, peak density)</li>
<li>Annotation files with location of the peaks within genes</li>
</ul>
<h3 class="diacol" style="font-weight: 100;">Advanced Analysis</h3>
<ul class="square">
<li>Comparative analysis (also called differential analysis) aimed at finding differentially bound sites or uniquely bound sites between two groups of samples</li>
<li>Annotation of differentially/uniquely bound sites</li>
<li>Determination of specific binding motifs within peaks</li>
<li>Gene ontology enrichment analysis on differentially binding/unique sites</li>
<li>Pathway enrichment analysis (KEGG or DOSE for human samples)</li>
<ul style="list-style-type: circle;"></ul>
</ul>
<h3 class="diacol" style="font-weight: 100;">Customized Analysis</h3>
<p class="text-left">If you require a type of analysis that is not in the previous list, <a href="#" data-reveal-id="quoteModal-3060">please consult with our expert bioinformatics team</a>.</p>
</div>
<div class="extra-spaced">
<h4>ChIP-seq</h4>
<center><img src="https://www.diagenode.com/img/product/services/chipseq-schema.png" width="600" height="757" /></center></div>
<div class="extra-spaced">
<h4>ATAC-Seq</h4>
<center><img src="https://www.diagenode.com/img/product/services/atacseq-schema.png" width="600" height="441" /></center></div>',
'label1' => '',
'info1' => '',
'label2' => '',
'info2' => '',
'label3' => '',
'info3' => '',
'format' => '',
'catalog_number' => 'G02010107',
'old_catalog_number' => '',
'sf_code' => '',
'type' => 'ACC',
'search_order' => '',
'price_EUR' => '/',
'price_USD' => '/',
'price_GBP' => '/',
'price_JPY' => '42800',
'price_CNY' => '/',
'price_AUD' => '/',
'country' => 'ALL',
'except_countries' => 'None',
'quote' => true,
'in_stock' => false,
'featured' => true,
'no_promo' => false,
'online' => true,
'master' => true,
'last_datasheet_update' => '',
'slug' => 'chromatin-data-analysis',
'meta_title' => 'Chromatin Data Analysis services for ChIp-Seq and ATAC-Seq | Diagenode',
'meta_keywords' => '',
'meta_description' => 'This service provides information on each region specifically bound by the targeted protein (peak) as well as its level of enrichment (ChIP-seq) or openness (ATAC-seq)',
'modified' => '2021-01-12 12:14:54',
'created' => '2020-03-26 10:01:39',
'locale' => 'eng'
),
'Antibody' => array(
'host' => '*****',
'id' => null,
'name' => null,
'description' => null,
'clonality' => null,
'isotype' => null,
'lot' => null,
'concentration' => null,
'reactivity' => null,
'type' => null,
'purity' => null,
'classification' => null,
'application_table' => null,
'storage_conditions' => null,
'storage_buffer' => null,
'precautions' => null,
'uniprot_acc' => null,
'slug' => null,
'meta_keywords' => null,
'meta_description' => null,
'modified' => null,
'created' => null,
'select_label' => null
),
'Slave' => array(),
'Group' => array(),
'Related' => array(),
'Application' => array(),
'Category' => array(
(int) 0 => array(
[maximum depth reached]
)
),
'Document' => array(),
'Feature' => array(),
'Image' => array(),
'Promotion' => array(),
'Protocol' => array(),
'Publication' => array(),
'Testimonial' => array(),
'Area' => array(),
'SafetySheet' => array()
)
)
$language = 'en'
$meta_keywords = ''
$meta_description = 'This service provides information on each region specifically bound by the targeted protein (peak) as well as its level of enrichment (ChIP-seq) or openness (ATAC-seq)'
$meta_title = 'Chromatin Data Analysis services for ChIp-Seq and ATAC-Seq | Diagenode'
$product = array(
'Product' => array(
'id' => '3060',
'antibody_id' => null,
'name' => 'Chromatin Data Analysis',
'description' => '<p>Chromatin Immunoprecipitation and <strong>A</strong>ssay for <strong>T</strong>ransposase-<strong>A</strong>ccessible <strong>C</strong>hromatin followed by high-throughput <strong>seq</strong>uencing (ChIp-Seq and ATAC-Seq, respectively) are two popular technologies used to study epigenetic regulations. ChIP-Seq allows the identification of genomic regions bound by a specific protein including histones, while ATAC-Seq evaluates the openness of heterochromatin regions accessible for epigenetic regulation. At Diagenode we have optimized the computing parameters to accurately detect binding sites and accessible chromatin regions. Specific parameters can be customized depending on the specifications of each project.</p>
<p>You can also consult with us for sequencing strategies to determine sequencing depth, read length and pairing mode that will vary greatly depending on the protein of interest and the biological question.</p>
<div class="extra-spaced">
<h2>What do we provide with the analysis?</h2>
<p>This analysis provides information on each region specifically bound by the targeted protein (peak) as well as its level of enrichment (ChIP-seq) or openness (ATAC-seq).</p>
<h3 class="diacol" style="font-weight: 100;">Standard Analysis</h3>
<ul class="square">
<li>Summary statistics (total sequenced reads, total mapping reads, uniquely aligned reads, PCR duplicates, number of peaks, average peak width, reads in peaks, frequency of reads in peaks, etc.)</li>
<li>Trimmed and filtered reads in fastQ files after sequencing QC</li>
<li>BAM sorted files from alignment to reference genome (indexed bam files and bigwig files included)</li>
<li>BED files from peak calling (peak location, peak calling score, peak density)</li>
<li>Annotation files with location of the peaks within genes</li>
</ul>
<h3 class="diacol" style="font-weight: 100;">Advanced Analysis</h3>
<ul class="square">
<li>Comparative analysis (also called differential analysis) aimed at finding differentially bound sites or uniquely bound sites between two groups of samples</li>
<li>Annotation of differentially/uniquely bound sites</li>
<li>Determination of specific binding motifs within peaks</li>
<li>Gene ontology enrichment analysis on differentially binding/unique sites</li>
<li>Pathway enrichment analysis (KEGG or DOSE for human samples)</li>
<ul style="list-style-type: circle;"></ul>
</ul>
<h3 class="diacol" style="font-weight: 100;">Customized Analysis</h3>
<p class="text-left">If you require a type of analysis that is not in the previous list, <a href="#" data-reveal-id="quoteModal-3060">please consult with our expert bioinformatics team</a>.</p>
</div>
<div class="extra-spaced">
<h4>ChIP-seq</h4>
<center><img src="https://www.diagenode.com/img/product/services/chipseq-schema.png" width="600" height="757" /></center></div>
<div class="extra-spaced">
<h4>ATAC-Seq</h4>
<center><img src="https://www.diagenode.com/img/product/services/atacseq-schema.png" width="600" height="441" /></center></div>',
'label1' => '',
'info1' => '',
'label2' => '',
'info2' => '',
'label3' => '',
'info3' => '',
'format' => '',
'catalog_number' => 'G02010107',
'old_catalog_number' => '',
'sf_code' => '',
'type' => 'ACC',
'search_order' => '',
'price_EUR' => '/',
'price_USD' => '/',
'price_GBP' => '/',
'price_JPY' => '42800',
'price_CNY' => '/',
'price_AUD' => '/',
'country' => 'ALL',
'except_countries' => 'None',
'quote' => true,
'in_stock' => false,
'featured' => true,
'no_promo' => false,
'online' => true,
'master' => true,
'last_datasheet_update' => '',
'slug' => 'chromatin-data-analysis',
'meta_title' => 'Chromatin Data Analysis services for ChIp-Seq and ATAC-Seq | Diagenode',
'meta_keywords' => '',
'meta_description' => 'This service provides information on each region specifically bound by the targeted protein (peak) as well as its level of enrichment (ChIP-seq) or openness (ATAC-seq)',
'modified' => '2021-01-12 12:14:54',
'created' => '2020-03-26 10:01:39',
'locale' => 'eng'
),
'Antibody' => array(
'host' => '*****',
'id' => null,
'name' => null,
'description' => null,
'clonality' => null,
'isotype' => null,
'lot' => null,
'concentration' => null,
'reactivity' => null,
'type' => null,
'purity' => null,
'classification' => null,
'application_table' => null,
'storage_conditions' => null,
'storage_buffer' => null,
'precautions' => null,
'uniprot_acc' => null,
'slug' => null,
'meta_keywords' => null,
'meta_description' => null,
'modified' => null,
'created' => null,
'select_label' => null
),
'Slave' => array(),
'Group' => array(),
'Related' => array(),
'Application' => array(),
'Category' => array(
(int) 0 => array(
'id' => '140',
'position' => '0',
'parent_id' => null,
'name' => 'Epigenomics Data Analysis Service',
'description' => '<div class="row">
<div class="small-12 medium-12 large-12 columns">
<div class="extra-spaced"><iframe width="560" height="315" src="https://www.youtube.com/embed/Ro5AOX_348M" frameborder="0" allow="accelerometer; autoplay; encrypted-media; gyroscope; picture-in-picture" allowfullscreen="allowfullscreen"></iframe></div>
</div>
</div>
<div class="extra-spaced">
<p>Epigenomic Services at Diagenode offers data analysis solutions for different application areas. These analysis services are open to everyone, whether you use our wet lab and sequencing service with us or not.</p>
</div>
<div class="extra-spaced">
<h2 class="diacol">ADVANTAGES</h2>
<ol>
<li>The bioinformatics team works constantly to optimize pipelines to deliver biologically meaningful results within a short turnaround time</li>
<li>Flexible and communicative team work in close collaboration with you to adapt to your analysis requirements</li>
<li>We help you shape the methods section of your manuscripts</li>
<li>We back up our internal servers daily to protect your data</li>
<li>We have great computing capacity to undertake large projects.</li>
</ol>
</div>
<div class="extra-spaced">
<h2>Check out our service offerings</h2>
<ul class="nobullet">
<li><i class="fa fa-arrow-circle-right"></i> <a href="https://www.diagenode.com/en/p/chromatin-data-analysis">Chromatin studies</a></li>
<li><i class="fa fa-arrow-circle-right"></i> <a href="https://www.diagenode.com/en/p/methylation-data-analysis">Methylation studies</a></li>
<li><i class="fa fa-arrow-circle-right"></i> <a href="https://www.diagenode.com/en/p/rna-data-analysis">RNA studies</a></li>
<li><i class="fa fa-arrow-circle-right"></i> <a href="https://www.diagenode.com/en/p/integrative-analysis">Integrative analysis of multiple omics data</a></li>
<li><i class="fa fa-arrow-circle-right"></i> <a href="https://www.diagenode.com/en/p/data-mining-service">Data mining with machine learning techniques</a></li>
</ul>
</div>
<div class="extra-spaced"><center><img src="https://www.diagenode.com/img/product/services/tech-tab.png" /></center></div>',
'no_promo' => true,
'in_menu' => false,
'online' => true,
'tabular' => false,
'hide' => false,
'all_format' => false,
'is_antibody' => false,
'slug' => 'bioinformatics-service',
'cookies_tag_id' => null,
'meta_keywords' => '',
'meta_description' => 'Epigenomic Services at Diagenode offers data analysis solutions for chromatin studies, methylation studies, RNA-seq, Integrative analysis of multiple omics data and Data mining. Contact our experienced bioinformatics team to analyze your data.',
'meta_title' => 'Epigenomics Bioinformatics data analysis Services | Diagenode',
'modified' => '2024-04-25 12:09:28',
'created' => '2019-07-29 11:06:33',
'ProductsCategory' => array(
[maximum depth reached]
),
'CookiesTag' => array([maximum depth reached])
)
),
'Document' => array(),
'Feature' => array(),
'Image' => array(),
'Promotion' => array(),
'Protocol' => array(),
'Publication' => array(),
'Testimonial' => array(),
'Area' => array(),
'SafetySheet' => array()
)
$country = 'US'
$countries_allowed = array(
(int) 0 => 'CA',
(int) 1 => 'US',
(int) 2 => 'IE',
(int) 3 => 'GB',
(int) 4 => 'DK',
(int) 5 => 'NO',
(int) 6 => 'SE',
(int) 7 => 'FI',
(int) 8 => 'NL',
(int) 9 => 'BE',
(int) 10 => 'LU',
(int) 11 => 'FR',
(int) 12 => 'DE',
(int) 13 => 'CH',
(int) 14 => 'AT',
(int) 15 => 'ES',
(int) 16 => 'IT',
(int) 17 => 'PT'
)
$outsource = false
$other_formats = array()
$edit = ''
$testimonials = ''
$featured_testimonials = ''
$related_products = ''
$rrbs_service = array(
(int) 0 => (int) 1894,
(int) 1 => (int) 1895
)
$chipseq_service = array(
(int) 0 => (int) 2683,
(int) 1 => (int) 1835,
(int) 2 => (int) 1836,
(int) 3 => (int) 2684,
(int) 4 => (int) 1838,
(int) 5 => (int) 1839,
(int) 6 => (int) 1856
)
$labelize = object(Closure) {
}
$old_catalog_number = ''
$label = '<img src="/img/banners/banner-customizer-back.png" alt=""/>'include - APP/View/Products/view.ctp, line 755
View::_evaluate() - CORE/Cake/View/View.php, line 971
View::_render() - CORE/Cake/View/View.php, line 933
View::render() - CORE/Cake/View/View.php, line 473
Controller::render() - CORE/Cake/Controller/Controller.php, line 963
ProductsController::slug() - APP/Controller/ProductsController.php, line 1052
ReflectionMethod::invokeArgs() - [internal], line ??
Controller::invokeAction() - CORE/Cake/Controller/Controller.php, line 491
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 193
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167
[main] - APP/webroot/index.php, line 118
Notice (8): Undefined variable: campaign_id [APP/View/Products/view.ctp, line 755]Code Context<!-- BEGIN: REQUEST_FORM MODAL -->
<div id="request_formModal" class="reveal-modal medium" data-reveal aria-labelledby="modalTitle" aria-hidden="true" role="dialog">
<?= $this->element('Forms/simple_form', array('solution_of_interest' => $solution_of_interest, 'header' => $header, 'message' => $message, 'campaign_id' => $campaign_id)) ?>
$viewFile = '/home/website-server/www/app/View/Products/view.ctp'
$dataForView = array(
'language' => 'en',
'meta_keywords' => '',
'meta_description' => 'This service provides information on each region specifically bound by the targeted protein (peak) as well as its level of enrichment (ChIP-seq) or openness (ATAC-seq)',
'meta_title' => 'Chromatin Data Analysis services for ChIp-Seq and ATAC-Seq | Diagenode',
'product' => array(
'Product' => array(
'id' => '3060',
'antibody_id' => null,
'name' => 'Chromatin Data Analysis',
'description' => '<p>Chromatin Immunoprecipitation and <strong>A</strong>ssay for <strong>T</strong>ransposase-<strong>A</strong>ccessible <strong>C</strong>hromatin followed by high-throughput <strong>seq</strong>uencing (ChIp-Seq and ATAC-Seq, respectively) are two popular technologies used to study epigenetic regulations. ChIP-Seq allows the identification of genomic regions bound by a specific protein including histones, while ATAC-Seq evaluates the openness of heterochromatin regions accessible for epigenetic regulation. At Diagenode we have optimized the computing parameters to accurately detect binding sites and accessible chromatin regions. Specific parameters can be customized depending on the specifications of each project.</p>
<p>You can also consult with us for sequencing strategies to determine sequencing depth, read length and pairing mode that will vary greatly depending on the protein of interest and the biological question.</p>
<div class="extra-spaced">
<h2>What do we provide with the analysis?</h2>
<p>This analysis provides information on each region specifically bound by the targeted protein (peak) as well as its level of enrichment (ChIP-seq) or openness (ATAC-seq).</p>
<h3 class="diacol" style="font-weight: 100;">Standard Analysis</h3>
<ul class="square">
<li>Summary statistics (total sequenced reads, total mapping reads, uniquely aligned reads, PCR duplicates, number of peaks, average peak width, reads in peaks, frequency of reads in peaks, etc.)</li>
<li>Trimmed and filtered reads in fastQ files after sequencing QC</li>
<li>BAM sorted files from alignment to reference genome (indexed bam files and bigwig files included)</li>
<li>BED files from peak calling (peak location, peak calling score, peak density)</li>
<li>Annotation files with location of the peaks within genes</li>
</ul>
<h3 class="diacol" style="font-weight: 100;">Advanced Analysis</h3>
<ul class="square">
<li>Comparative analysis (also called differential analysis) aimed at finding differentially bound sites or uniquely bound sites between two groups of samples</li>
<li>Annotation of differentially/uniquely bound sites</li>
<li>Determination of specific binding motifs within peaks</li>
<li>Gene ontology enrichment analysis on differentially binding/unique sites</li>
<li>Pathway enrichment analysis (KEGG or DOSE for human samples)</li>
<ul style="list-style-type: circle;"></ul>
</ul>
<h3 class="diacol" style="font-weight: 100;">Customized Analysis</h3>
<p class="text-left">If you require a type of analysis that is not in the previous list, <a href="#" data-reveal-id="quoteModal-3060">please consult with our expert bioinformatics team</a>.</p>
</div>
<div class="extra-spaced">
<h4>ChIP-seq</h4>
<center><img src="https://www.diagenode.com/img/product/services/chipseq-schema.png" width="600" height="757" /></center></div>
<div class="extra-spaced">
<h4>ATAC-Seq</h4>
<center><img src="https://www.diagenode.com/img/product/services/atacseq-schema.png" width="600" height="441" /></center></div>',
'label1' => '',
'info1' => '',
'label2' => '',
'info2' => '',
'label3' => '',
'info3' => '',
'format' => '',
'catalog_number' => 'G02010107',
'old_catalog_number' => '',
'sf_code' => '',
'type' => 'ACC',
'search_order' => '',
'price_EUR' => '/',
'price_USD' => '/',
'price_GBP' => '/',
'price_JPY' => '42800',
'price_CNY' => '/',
'price_AUD' => '/',
'country' => 'ALL',
'except_countries' => 'None',
'quote' => true,
'in_stock' => false,
'featured' => true,
'no_promo' => false,
'online' => true,
'master' => true,
'last_datasheet_update' => '',
'slug' => 'chromatin-data-analysis',
'meta_title' => 'Chromatin Data Analysis services for ChIp-Seq and ATAC-Seq | Diagenode',
'meta_keywords' => '',
'meta_description' => 'This service provides information on each region specifically bound by the targeted protein (peak) as well as its level of enrichment (ChIP-seq) or openness (ATAC-seq)',
'modified' => '2021-01-12 12:14:54',
'created' => '2020-03-26 10:01:39',
'locale' => 'eng'
),
'Antibody' => array(
'host' => '*****',
'id' => null,
'name' => null,
'description' => null,
'clonality' => null,
'isotype' => null,
'lot' => null,
'concentration' => null,
'reactivity' => null,
'type' => null,
'purity' => null,
'classification' => null,
'application_table' => null,
'storage_conditions' => null,
'storage_buffer' => null,
'precautions' => null,
'uniprot_acc' => null,
'slug' => null,
'meta_keywords' => null,
'meta_description' => null,
'modified' => null,
'created' => null,
'select_label' => null
),
'Slave' => array(),
'Group' => array(),
'Related' => array(),
'Application' => array(),
'Category' => array(
(int) 0 => array(
[maximum depth reached]
)
),
'Document' => array(),
'Feature' => array(),
'Image' => array(),
'Promotion' => array(),
'Protocol' => array(),
'Publication' => array(),
'Testimonial' => array(),
'Area' => array(),
'SafetySheet' => array()
)
)
$language = 'en'
$meta_keywords = ''
$meta_description = 'This service provides information on each region specifically bound by the targeted protein (peak) as well as its level of enrichment (ChIP-seq) or openness (ATAC-seq)'
$meta_title = 'Chromatin Data Analysis services for ChIp-Seq and ATAC-Seq | Diagenode'
$product = array(
'Product' => array(
'id' => '3060',
'antibody_id' => null,
'name' => 'Chromatin Data Analysis',
'description' => '<p>Chromatin Immunoprecipitation and <strong>A</strong>ssay for <strong>T</strong>ransposase-<strong>A</strong>ccessible <strong>C</strong>hromatin followed by high-throughput <strong>seq</strong>uencing (ChIp-Seq and ATAC-Seq, respectively) are two popular technologies used to study epigenetic regulations. ChIP-Seq allows the identification of genomic regions bound by a specific protein including histones, while ATAC-Seq evaluates the openness of heterochromatin regions accessible for epigenetic regulation. At Diagenode we have optimized the computing parameters to accurately detect binding sites and accessible chromatin regions. Specific parameters can be customized depending on the specifications of each project.</p>
<p>You can also consult with us for sequencing strategies to determine sequencing depth, read length and pairing mode that will vary greatly depending on the protein of interest and the biological question.</p>
<div class="extra-spaced">
<h2>What do we provide with the analysis?</h2>
<p>This analysis provides information on each region specifically bound by the targeted protein (peak) as well as its level of enrichment (ChIP-seq) or openness (ATAC-seq).</p>
<h3 class="diacol" style="font-weight: 100;">Standard Analysis</h3>
<ul class="square">
<li>Summary statistics (total sequenced reads, total mapping reads, uniquely aligned reads, PCR duplicates, number of peaks, average peak width, reads in peaks, frequency of reads in peaks, etc.)</li>
<li>Trimmed and filtered reads in fastQ files after sequencing QC</li>
<li>BAM sorted files from alignment to reference genome (indexed bam files and bigwig files included)</li>
<li>BED files from peak calling (peak location, peak calling score, peak density)</li>
<li>Annotation files with location of the peaks within genes</li>
</ul>
<h3 class="diacol" style="font-weight: 100;">Advanced Analysis</h3>
<ul class="square">
<li>Comparative analysis (also called differential analysis) aimed at finding differentially bound sites or uniquely bound sites between two groups of samples</li>
<li>Annotation of differentially/uniquely bound sites</li>
<li>Determination of specific binding motifs within peaks</li>
<li>Gene ontology enrichment analysis on differentially binding/unique sites</li>
<li>Pathway enrichment analysis (KEGG or DOSE for human samples)</li>
<ul style="list-style-type: circle;"></ul>
</ul>
<h3 class="diacol" style="font-weight: 100;">Customized Analysis</h3>
<p class="text-left">If you require a type of analysis that is not in the previous list, <a href="#" data-reveal-id="quoteModal-3060">please consult with our expert bioinformatics team</a>.</p>
</div>
<div class="extra-spaced">
<h4>ChIP-seq</h4>
<center><img src="https://www.diagenode.com/img/product/services/chipseq-schema.png" width="600" height="757" /></center></div>
<div class="extra-spaced">
<h4>ATAC-Seq</h4>
<center><img src="https://www.diagenode.com/img/product/services/atacseq-schema.png" width="600" height="441" /></center></div>',
'label1' => '',
'info1' => '',
'label2' => '',
'info2' => '',
'label3' => '',
'info3' => '',
'format' => '',
'catalog_number' => 'G02010107',
'old_catalog_number' => '',
'sf_code' => '',
'type' => 'ACC',
'search_order' => '',
'price_EUR' => '/',
'price_USD' => '/',
'price_GBP' => '/',
'price_JPY' => '42800',
'price_CNY' => '/',
'price_AUD' => '/',
'country' => 'ALL',
'except_countries' => 'None',
'quote' => true,
'in_stock' => false,
'featured' => true,
'no_promo' => false,
'online' => true,
'master' => true,
'last_datasheet_update' => '',
'slug' => 'chromatin-data-analysis',
'meta_title' => 'Chromatin Data Analysis services for ChIp-Seq and ATAC-Seq | Diagenode',
'meta_keywords' => '',
'meta_description' => 'This service provides information on each region specifically bound by the targeted protein (peak) as well as its level of enrichment (ChIP-seq) or openness (ATAC-seq)',
'modified' => '2021-01-12 12:14:54',
'created' => '2020-03-26 10:01:39',
'locale' => 'eng'
),
'Antibody' => array(
'host' => '*****',
'id' => null,
'name' => null,
'description' => null,
'clonality' => null,
'isotype' => null,
'lot' => null,
'concentration' => null,
'reactivity' => null,
'type' => null,
'purity' => null,
'classification' => null,
'application_table' => null,
'storage_conditions' => null,
'storage_buffer' => null,
'precautions' => null,
'uniprot_acc' => null,
'slug' => null,
'meta_keywords' => null,
'meta_description' => null,
'modified' => null,
'created' => null,
'select_label' => null
),
'Slave' => array(),
'Group' => array(),
'Related' => array(),
'Application' => array(),
'Category' => array(
(int) 0 => array(
'id' => '140',
'position' => '0',
'parent_id' => null,
'name' => 'Epigenomics Data Analysis Service',
'description' => '<div class="row">
<div class="small-12 medium-12 large-12 columns">
<div class="extra-spaced"><iframe width="560" height="315" src="https://www.youtube.com/embed/Ro5AOX_348M" frameborder="0" allow="accelerometer; autoplay; encrypted-media; gyroscope; picture-in-picture" allowfullscreen="allowfullscreen"></iframe></div>
</div>
</div>
<div class="extra-spaced">
<p>Epigenomic Services at Diagenode offers data analysis solutions for different application areas. These analysis services are open to everyone, whether you use our wet lab and sequencing service with us or not.</p>
</div>
<div class="extra-spaced">
<h2 class="diacol">ADVANTAGES</h2>
<ol>
<li>The bioinformatics team works constantly to optimize pipelines to deliver biologically meaningful results within a short turnaround time</li>
<li>Flexible and communicative team work in close collaboration with you to adapt to your analysis requirements</li>
<li>We help you shape the methods section of your manuscripts</li>
<li>We back up our internal servers daily to protect your data</li>
<li>We have great computing capacity to undertake large projects.</li>
</ol>
</div>
<div class="extra-spaced">
<h2>Check out our service offerings</h2>
<ul class="nobullet">
<li><i class="fa fa-arrow-circle-right"></i> <a href="https://www.diagenode.com/en/p/chromatin-data-analysis">Chromatin studies</a></li>
<li><i class="fa fa-arrow-circle-right"></i> <a href="https://www.diagenode.com/en/p/methylation-data-analysis">Methylation studies</a></li>
<li><i class="fa fa-arrow-circle-right"></i> <a href="https://www.diagenode.com/en/p/rna-data-analysis">RNA studies</a></li>
<li><i class="fa fa-arrow-circle-right"></i> <a href="https://www.diagenode.com/en/p/integrative-analysis">Integrative analysis of multiple omics data</a></li>
<li><i class="fa fa-arrow-circle-right"></i> <a href="https://www.diagenode.com/en/p/data-mining-service">Data mining with machine learning techniques</a></li>
</ul>
</div>
<div class="extra-spaced"><center><img src="https://www.diagenode.com/img/product/services/tech-tab.png" /></center></div>',
'no_promo' => true,
'in_menu' => false,
'online' => true,
'tabular' => false,
'hide' => false,
'all_format' => false,
'is_antibody' => false,
'slug' => 'bioinformatics-service',
'cookies_tag_id' => null,
'meta_keywords' => '',
'meta_description' => 'Epigenomic Services at Diagenode offers data analysis solutions for chromatin studies, methylation studies, RNA-seq, Integrative analysis of multiple omics data and Data mining. Contact our experienced bioinformatics team to analyze your data.',
'meta_title' => 'Epigenomics Bioinformatics data analysis Services | Diagenode',
'modified' => '2024-04-25 12:09:28',
'created' => '2019-07-29 11:06:33',
'ProductsCategory' => array(
[maximum depth reached]
),
'CookiesTag' => array([maximum depth reached])
)
),
'Document' => array(),
'Feature' => array(),
'Image' => array(),
'Promotion' => array(),
'Protocol' => array(),
'Publication' => array(),
'Testimonial' => array(),
'Area' => array(),
'SafetySheet' => array()
)
$country = 'US'
$countries_allowed = array(
(int) 0 => 'CA',
(int) 1 => 'US',
(int) 2 => 'IE',
(int) 3 => 'GB',
(int) 4 => 'DK',
(int) 5 => 'NO',
(int) 6 => 'SE',
(int) 7 => 'FI',
(int) 8 => 'NL',
(int) 9 => 'BE',
(int) 10 => 'LU',
(int) 11 => 'FR',
(int) 12 => 'DE',
(int) 13 => 'CH',
(int) 14 => 'AT',
(int) 15 => 'ES',
(int) 16 => 'IT',
(int) 17 => 'PT'
)
$outsource = false
$other_formats = array()
$edit = ''
$testimonials = ''
$featured_testimonials = ''
$related_products = ''
$rrbs_service = array(
(int) 0 => (int) 1894,
(int) 1 => (int) 1895
)
$chipseq_service = array(
(int) 0 => (int) 2683,
(int) 1 => (int) 1835,
(int) 2 => (int) 1836,
(int) 3 => (int) 2684,
(int) 4 => (int) 1838,
(int) 5 => (int) 1839,
(int) 6 => (int) 1856
)
$labelize = object(Closure) {
}
$old_catalog_number = ''
$label = '<img src="/img/banners/banner-customizer-back.png" alt=""/>'include - APP/View/Products/view.ctp, line 755
View::_evaluate() - CORE/Cake/View/View.php, line 971
View::_render() - CORE/Cake/View/View.php, line 933
View::render() - CORE/Cake/View/View.php, line 473
Controller::render() - CORE/Cake/Controller/Controller.php, line 963
ProductsController::slug() - APP/Controller/ProductsController.php, line 1052
ReflectionMethod::invokeArgs() - [internal], line ??
Controller::invokeAction() - CORE/Cake/Controller/Controller.php, line 491
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 193
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167
[main] - APP/webroot/index.php, line 118
×
