Summary statistics (total sequenced reads, total mapping reads, uniquely aligned reads, PCR duplicates, number of peaks, average peak width, reads in peaks, frequency of reads in peaks, etc.)
Trimmed and filtered reads in fastQ files after sequencing QC
BAM sorted files from alignment to reference genome (indexed bam files and bigwig files included)
BED files from peak calling (peak location, peak calling score, peak density)
Annotation files with location of the peaks within genes
高度解析
Comparative analysis (also called differential analysis) aimed at finding differentially bound sites or uniquely bound sites between two groups of samples
Annotation of differentially/uniquely bound sites
Determination of specific binding motifs within peaks
Gene ontology enrichment analysis on differentially binding/unique sites
Pathway enrichment analysis (KEGG or DOSE for human samples)
